Installation

Requirements

• Python >=3.11,<3.14

• PyTorch >=2.8,<3.0

Install From PyPI

pip install bsvae

Install From Source

git clone https://github.com/heart-gen/BSVAE.git
cd BSVAE
pip install -e .

Optional Dependencies

• anndata is optional and only required for .h5ad input or .h5ad latent export helpers

Verify The Install

bsvae-train --help
bsvae-sweep-k --help
bsvae-networks --help
bsvae-simulate --help

GPU Behavior

The CLI uses CUDA when available. Use --no-cuda to force CPU mode.

bsvae-train run_cpu --dataset data/expression.csv --no-cuda